Genome-wide identification and expression analysis of HKT transcription factor under salt stress in nine plant species.
Identifieur interne : 000931 ( Main/Exploration ); précédent : 000930; suivant : 000932Genome-wide identification and expression analysis of HKT transcription factor under salt stress in nine plant species.
Auteurs : Huayang Li [République populaire de Chine] ; Guangzhao Xu [République populaire de Chine] ; Chao Yang [République populaire de Chine] ; Long Yang [République populaire de Chine] ; Zhenchang Liang [République populaire de Chine]Source :
- Ecotoxicology and environmental safety [ 1090-2414 ] ; 2019.
Descripteurs français
- KwdFr :
- Alignement de séquences (MeSH), Citrus sinensis (génétique), Coffea (génétique), Cucumis sativus (génétique), Facteurs de transcription (génétique), Génome végétal (MeSH), Lycopersicon esculentum (génétique), Populus (génétique), Protéines végétales (génétique), Protéines végétales (métabolisme), Régulation de l'expression des gènes végétaux (MeSH), Soja (génétique), Sorghum (génétique), Stress salin (MeSH), Structures génétiques (MeSH), Séquence d'acides aminés (MeSH), Vitis (génétique), Zea mays (génétique).
- MESH :
- génétique : Citrus sinensis, Coffea, Cucumis sativus, Facteurs de transcription, Lycopersicon esculentum, Populus, Protéines végétales, Soja, Sorghum, Vitis, Zea mays.
- métabolisme : Protéines végétales.
- Alignement de séquences, Génome végétal, Régulation de l'expression des gènes végétaux, Stress salin, Structures génétiques, Séquence d'acides aminés.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Citrus sinensis (genetics), Coffea (genetics), Cucumis sativus (genetics), Gene Expression Regulation, Plant (MeSH), Genetic Structures (MeSH), Genome, Plant (MeSH), Lycopersicon esculentum (genetics), Plant Proteins (genetics), Plant Proteins (metabolism), Populus (genetics), Salt Stress (MeSH), Sequence Alignment (MeSH), Sorghum (genetics), Soybeans (genetics), Transcription Factors (genetics), Vitis (genetics), Zea mays (genetics).
- MESH :
- chemical , genetics : Plant Proteins, Transcription Factors.
- genetics : Citrus sinensis, Coffea, Cucumis sativus, Lycopersicon esculentum, Populus, Sorghum, Soybeans, Vitis, Zea mays.
- chemical , metabolism : Plant Proteins.
- Amino Acid Sequence, Gene Expression Regulation, Plant, Genetic Structures, Genome, Plant, Salt Stress, Sequence Alignment.
Abstract
High-affinity K+ (HKT) gene family is regulated the transport of Na+ and maintain the balance between Na+ and K+ in the process of plant growth, development and response to abiotic stress. Despite this fact, systemic and comprehensive studies on HKT in multiply plants remains unknown. A total of 29 HKT genes distributed on nine species were identified. Phylogenetic tree analysis results indicated that HKT genes were divided into five homology subfamilies. Combining structural analysis with protein contains five highly conservative motifs, HKT family has similar gene structures and special gene characteristics. Finally, the expression patterns of HKT showed two different dramatic changes in different organs and tissues under different salt stress in multiply plants. This study has many implications for research into the comparative genomics analysis of HTK gene family, which revealed regulation mechanism of HKT genes, is valuable for understanding development and response to abiotic stress in plant.
DOI: 10.1016/j.ecoenv.2019.01.008
PubMed: 30639869
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Despite this fact, systemic and comprehensive studies on HKT in multiply plants remains unknown. A total of 29 HKT genes distributed on nine species were identified. Phylogenetic tree analysis results indicated that HKT genes were divided into five homology subfamilies. Combining structural analysis with protein contains five highly conservative motifs, HKT family has similar gene structures and special gene characteristics. Finally, the expression patterns of HKT showed two different dramatic changes in different organs and tissues under different salt stress in multiply plants. This study has many implications for research into the comparative genomics analysis of HTK gene family, which revealed regulation mechanism of HKT genes, is valuable for understanding development and response to abiotic stress in plant.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" IndexingMethod="Curated" Owner="NLM"><PMID Version="1">30639869</PMID><DateCompleted><Year>2019</Year><Month>03</Month><Day>26</Day></DateCompleted><DateRevised><Year>2019</Year><Month>03</Month><Day>26</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1090-2414</ISSN><JournalIssue CitedMedium="Internet"><Volume>171</Volume><PubDate><Year>2019</Year><Month>Apr</Month><Day>30</Day></PubDate></JournalIssue><Title>Ecotoxicology and environmental safety</Title><ISOAbbreviation>Ecotoxicol Environ Saf</ISOAbbreviation></Journal><ArticleTitle>Genome-wide identification and expression analysis of HKT transcription factor under salt stress in nine plant species.</ArticleTitle><Pagination><MedlinePgn>435-442</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0147-6513(19)30008-9</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.ecoenv.2019.01.008</ELocationID><Abstract><AbstractText>High-affinity K+ (HKT) gene family is regulated the transport of Na+ and maintain the balance between Na+ and K+ in the process of plant growth, development and response to abiotic stress. Despite this fact, systemic and comprehensive studies on HKT in multiply plants remains unknown. A total of 29 HKT genes distributed on nine species were identified. Phylogenetic tree analysis results indicated that HKT genes were divided into five homology subfamilies. Combining structural analysis with protein contains five highly conservative motifs, HKT family has similar gene structures and special gene characteristics. Finally, the expression patterns of HKT showed two different dramatic changes in different organs and tissues under different salt stress in multiply plants. This study has many implications for research into the comparative genomics analysis of HTK gene family, which revealed regulation mechanism of HKT genes, is valuable for understanding development and response to abiotic stress in plant.</AbstractText><CopyrightInformation>Copyright © 2019 Elsevier Inc. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Huayang</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>Agricultural Big-Data Research Center and College of Plant Protection, Shandong Agricultural University, Taian 271018, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Xu</LastName><ForeName>Guangzhao</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Beijing Key Laboratory of Grape Science and Enology and Key Laboratory of Plant Resource, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Chao</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Agricultural Big-Data Research Center and College of Plant Protection, Shandong Agricultural University, Taian 271018, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Long</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Agricultural Big-Data Research Center and College of Plant Protection, Shandong Agricultural University, Taian 271018, China. Electronic address: lyang@sdau.edu.cn.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Liang</LastName><ForeName>Zhenchang</ForeName><Initials>Z</Initials><AffiliationInfo><Affiliation>Beijing Key Laboratory of Grape Science and Enology and Key Laboratory of Plant Resource, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China. Electronic address: zl249@ibcas.ac.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2019</Year><Month>01</Month><Day>09</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Ecotoxicol Environ Saf</MedlineTA><NlmUniqueID>7805381</NlmUniqueID><ISSNLinking>0147-6513</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D010940">Plant Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032084" MajorTopicYN="N">Citrus sinensis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040503" MajorTopicYN="N">Coffea</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018553" MajorTopicYN="N">Cucumis sativus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="Y">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D040342" MajorTopicYN="N">Genetic Structures</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018745" MajorTopicYN="Y">Genome, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018551" MajorTopicYN="N">Lycopersicon esculentum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010940" MajorTopicYN="N">Plant Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000077323" MajorTopicYN="Y">Salt Stress</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016415" MajorTopicYN="N">Sequence Alignment</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D045868" MajorTopicYN="N">Sorghum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D013025" MajorTopicYN="N">Soybeans</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D027843" MajorTopicYN="N">Vitis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D003313" MajorTopicYN="N">Zea mays</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Development</Keyword><Keyword MajorTopicYN="N">HKT</Keyword><Keyword MajorTopicYN="N">Plants</Keyword><Keyword MajorTopicYN="N">Salt resistance</Keyword><Keyword MajorTopicYN="N">Transporters</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2018</Year><Month>09</Month><Day>18</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2018</Year><Month>12</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2019</Year><Month>01</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2019</Year><Month>1</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2019</Year><Month>3</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2019</Year><Month>1</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">30639869</ArticleId><ArticleId IdType="pii">S0147-6513(19)30008-9</ArticleId><ArticleId IdType="doi">10.1016/j.ecoenv.2019.01.008</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>République populaire de Chine</li></country><settlement><li>Pékin</li></settlement></list><tree><country name="République populaire de Chine"><noRegion><name sortKey="Li, Huayang" sort="Li, Huayang" uniqKey="Li H" first="Huayang" last="Li">Huayang Li</name></noRegion><name sortKey="Liang, Zhenchang" sort="Liang, Zhenchang" uniqKey="Liang Z" first="Zhenchang" last="Liang">Zhenchang Liang</name><name sortKey="Xu, Guangzhao" sort="Xu, Guangzhao" uniqKey="Xu G" first="Guangzhao" last="Xu">Guangzhao Xu</name><name sortKey="Yang, Chao" sort="Yang, Chao" uniqKey="Yang C" first="Chao" last="Yang">Chao Yang</name><name sortKey="Yang, Long" sort="Yang, Long" uniqKey="Yang L" first="Long" last="Yang">Long Yang</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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